PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G166800.5.p
Common NamePRUPE_ppa002978mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 621aa    MW: 69344.5 Da    PI: 4.827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G166800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10355396854
                         HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         +Er+RR+++N+++  Lr+l+P+ +      K++Ka+iL  A++++k+L
  Prupe.8G166800.5.p 355 AERKRRKKLNDRLYCLRSLVPNiS------KMDKAAILGDAIDFVKDL 396
                         7*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-188156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.555347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-12349401No hitNo description
SuperFamilySSF474597.2E-17350412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15355410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8355396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.23E-4501563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MIIIMQNLTE RLRPLVGLKG WDYCVIWKLS ENQRFIELMD CCCSGADENT QTNGGQELLF  60
PVYPVLPCRD TMQHSRTNSC DVLAQLPSSL SLDSGIYAHP LISNQPIWLN SSSNRDSSAM  120
AERDGTRVLV PSAGGLIELF VSKDVSEDQQ VIDYITAQCN ISKEQDTLLG AGCNTSFPVN  180
IQDMSTEIQP HAFPGNENEG NDNLNSNHFQ QPPVVSPSVD HDSNVPYDIS VDRIRLCSAS  240
PMNFLQHVTY NSENSMKNCN SNVYYEQRSH ESLGEMGLQA DADAPNMHNS MHVMEALENM  300
EQQGVEDQDS VQHEAQGGRT ADNSGSDCSD QIDDEDDTKY RRRTGKGPQS KNLFAERKRR  360
KKLNDRLYCL RSLVPNISKM DKAAILGDAI DFVKDLLRQV KELQDELEQH SNDEGPNKKT  420
SANICGNHNN FQPEILNQNG TSITNKPENG DKPPNGFHVG TAGDIGNISK QKQDSDSTND  480
RGQQMEPQVG VTQLDGNEFF VTVFCEHKPG GFVRLMEALD TLGLEVTNAN VTSFRSLVSN  540
VFKVEKKDSE VVQADDVRDS LLEITRNPSS KVWPEMAKAK ASENGSGLDH FHHDDHNHYQ  600
QHHLHNYHAS SYNLQHLYNY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340361RRRTGKGPQSKNLFAERKRRKK
2355362ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200304.10.0hypothetical protein PRUPE_ppa002978mg
TrEMBLM5VX360.0M5VX36_PRUPE; Uncharacterized protein
STRINGVIT_01s0127g00860.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-130bHLH family protein